Are there similar limitations to our knowledge of the physical universe? I have to believe so. There are many areas of science in which knowledge has vastly increased in the last few decades. It is, therefore, reasonably certain scientifically that evolution occurs at the micro level (small changes that we can observe over a human lifetime). This would have been an extremely troubling admission for people of faith a century ago and is still troubling to many today. But microevolution is within the direct purview of scientific method and few people of faith question its existence today.
But can we extrapolate from microevolution to large changes taking place over millions of years (macroevolution)? There is significant scientific evidence that points in that direction and one does not have to be a God-hater to see that. For example, the order in the fossil record suggests some kind of evolutionary progression and radiometric dating indicates a considerable amount of time for this progression. I have no compelling scientific data to counter the basic thrust of that evidence and my more conservative scientific friends reluctantly agree that macro-evolution has significant evidentiary support, while creation, at the moment, is not supported with anything as compelling as the two evidences above.
But that does not mean that creation by divine fiat is disproved. After all, science by definition looks for patterns in repetitive events. But creation as promoted in the Bible involves single acts by an intelligent Creator. Science does not offer the tools to explain such singular events in the distant past. A single act of creation would inevitably leave some very challenging evidence to the scientist and could not be proven or disproven by standard scientific methods. So in the absence of direct observation and experimentation, can we be absolutely sure of the way things occurred in the distant past? Is it possible that we have yet to discover the flaws in our current analysis? I think humility is an appropriate approach for both science and faith. We must not only bow before the evidence we have but also before the evidence we have not yet been able to examine.